Hg_chrom3_TN10mRNA_4520
Organism: Heterodera glycines Gene Locus: chr3:427825-429528 Feature type: polypeptideProtein Sequence
Length: 83
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.56 | 1.121 | 1.314 | 2.493 | 1.004 | 0.618 | 1.004 | 1.205 | 0.268 | 1.465 | 1.095 | 0.709 | 2.343 | 0.927 | 0.246 | 0.688 | 0.79 | 1.095 | 2.78 | 0.354 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4285
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-25
|
0.961
|
1.000
|
0.000
|
0.000
|
0.386
|
0.273
|
0.244
|
0.309
|
0.233
|
0.115
|
0.103
|
0.056
|
0.173
|
0.923
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007361
|
1.000
|
1.000
|
Hsc_gene_16566.t1
|
Hsc_gene_16566.t1
|
— |
Q868Z9.2 Papilin [Drosophila melanogaster]
|
XP_050665922.1 zonadhesin [Leptidea sinapis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.799|GO:0005575_0.696|GO:0110165_0.690|GO:0003674_0.656|GO:0065007_0.558|GO:0009987_0.538|GO:0005488_0.529|GO:0005515_0.529
|
IPR002223+31-82_32-82_33-81+|IPR036880+22-82_30-82+|IPR053014+18-82+
|
SM00131+31-82+
|
PF00014+32-82+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR46339+18-82+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-83
|
6nan_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
9319.660
|
4.664
|
-3.000
|
24.096
|
15.663
|
40.964
|
59.036
|
10.843
|
13.253
|
54.217
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
3234.528
|
17.834
|
224.160
|
59.559
|
31.362
|
822.953
|
35354.010
|
197.894
|
170.321
|
257.905
|
220.369
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.427
|
1.604
|
-1.805
|
-0.960
|
4.723
|
5.440
|
-2.167
|
7.628
|
— | — | — | — | — |