Hg_chrom3_TN10mRNA_4525
Organism: Heterodera glycines Gene Locus: chr3:451126-458914 Feature type: polypeptideProtein Sequence
Length: 1,004
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.845 | 1.436 | 0.978 | 0.653 | 0.979 | 1.226 | 0.759 | 1.444 | 0.952 | 1.009 | 0.739 | 0.879 | 1.217 | 1.149 | 1.199 | 0.896 | 1.143 | 1.056 | 1.456 | 0.85 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4290
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RRRR,RKPTRLDQFTEQRMERR
|
— | — |
3-44
|
0.997
|
— | — |
0.002
|
— | — |
0.241
|
0.185
|
0.079
|
0.278
|
0.130
|
0.067
|
0.149
|
0.066
|
0.476
|
0.707
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003467
|
1.000
|
2.000
|
Hsc_gene_16570.t1;Hsc_gene_16570.t2
|
Hsc_gene_16570.t1;Hsc_gene_16570.t2
|
— |
Q8IWV2.1 Contactin-4 [Homo sapiens]
|
KAI1726468.1 fibronectin type III domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.855|GO:0009987_0.785|GO:0005575_0.779|GO:0110165_0.773|GO:0016020_0.630|GO:0071944_0.582|GO:0003674_0.564|GO:0005886_0.550|GO:0032501_0.550|GO:0032502_0.543|GO:0048856_0.543|GO:0007275_0.519|GO:0048731_0.510|GO:0071840_0.502
|
IPR003598+131-197_224-295_322-387_414-484+|IPR003599+125-208_218-306_316-398_408-495+|IPR003961+498-599_516-600_616-704_618-711_618-718_721-879_724-761+|IPR007110+118-208_211-292_310-396_400-491+|IPR013098+215-303_409-493+|IPR013783+114-212_213-305_306-402_403-496_502-608_609-713_714-898+|IPR036116+485-605_613-712_713-900+|IPR036179+126-215_202-305_308-399_412-499+
|
SM00060+498-599_616-704_721-879+|SM00408+131-197_224-295_322-387_414-484+|SM00409+125-208_218-306_316-398_408-495+
|
PF07679+215-303_409-493+Immunoglobulin_I-set_domain|PF13927+310-384+Immunoglobulin_domain
|
G3DSA:2.60.40.10:FF:000035+611-713+Contactin_1
|
PTHR44170+80-941+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
764-809
|
2.000
|
1-763;810-1004
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
112743.910
|
7.090
|
9.500
|
24.900
|
12.052
|
49.104
|
50.896
|
13.645
|
11.255
|
53.287
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1235.521
|
3113.854
|
1438.305
|
768.882
|
933.803
|
971.393
|
1045.599
|
911.050
|
1500.609
|
836.366
|
1121.042
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.344
|
-2.155
|
-0.795
|
0.249
|
— | — | — |
0.341
|
— | — | — | — | — |
No JSON data available for plots.