Hg_chrom3_TN10mRNA_4526
Organism: Heterodera glycines Gene Locus: chr3:467067-469881 Feature type: polypeptideProtein Sequence
Length: 296
(Signal peptide: 1-42)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 1.1 | 0.799 | 0.349 | 0.845 | 1.473 | 0.804 | 1.689 | 1.502 | 0.867 | 0.665 | 0.994 | 1.22 | 1.819 | 1.379 | 1.062 | 0.886 | 0.87 | 1.04 | 0.894 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4291
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-42
|
— |
0.916
|
— |
0.000
|
0.249
|
0.300
|
0.040
|
0.240
|
0.050
|
0.028
|
0.060
|
0.014
|
0.400
|
0.761
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007364
|
1.000
|
1.000
|
Hsc_gene_16572.t1
|
Hsc_gene_16572.t1
|
— | — |
KAI1726467.1 immunoglobulin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.835|GO:0110165_0.814|GO:0008150_0.800|GO:0009987_0.706|GO:0016020_0.590|GO:0003674_0.569|GO:0032501_0.564|GO:0071944_0.537|GO:0032502_0.530|GO:0048856_0.530
|
IPR003598+140-208+|IPR007110+115-218+|IPR013783+134-221+|IPR036179+141-217+|IPR051275+134-264+
|
SM00408+140-208+
|
PF13927+141-205+Immunoglobulin_domain
|
— |
PTHR11640+134-264+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
89-152
|
2.000
|
1-88;153-296
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
33251.710
|
9.252
|
10.000
|
23.986
|
12.162
|
47.297
|
52.703
|
14.527
|
9.459
|
51.014
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
434.008
|
339.828
|
64.373
|
76.784
|
148.847
|
117.118
|
142.120
|
24.010
|
560.495
|
1136.007
|
889.359
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.627
|
-2.283
|
0.361
|
0.924
|
— | — |
-2.400
|
2.710
|
— |
-2.694
|
— | — | — |