Hg_chrom3_TN10mRNA_4527
Organism: Heterodera glycines Gene Locus: chr3:481675-486850 Feature type: polypeptideProtein Sequence
Length: 477
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 1.316 | 0.648 | 0.361 | 0.804 | 1.29 | 0.574 | 2.201 | 1.258 | 1.586 | 0.889 | 1.603 | 1.863 | 0.645 | 0.984 | 0.958 | 0.584 | 0.572 | 2.258 | 1.11 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4292
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.152
|
0.340
|
0.056
|
0.151
|
0.872
|
0.245
|
0.417
|
0.072
|
0.083
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007365
|
1.000
|
1.000
|
Hsc_gene_16573.t1
|
Hsc_gene_16573.t1
|
— |
Q23221.2 Delta(6)-fatty-acid desaturase fat-3 [Caenorhabditis elegans]
|
KAI1726464.1 fatty acid desaturase domain-containing protein [Ditylenchus destructor]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0016491|GO:0020037
|
GO:0008150_0.871|GO:0003674_0.865|GO:0009987_0.826|GO:0003824_0.742|GO:0008152_0.700|GO:0044238_0.680|GO:0044237_0.677|GO:0009058_0.670|GO:0016491_0.664|GO:0016705_0.657|GO:0044249_0.647|GO:0005575_0.635|GO:0110165_0.635|GO:0006629_0.608|GO:0008610_0.604|GO:0016717_0.601|GO:0044255_0.601|GO:0016020_0.582
|
IPR005804+169-435+|IPR012171+4-466_18-457+|IPR018506+34-41+|IPR036400+4-77_18-72+
|
— |
PF00487+169-435+Fatty_acid_desaturase
|
— |
PTHR19353+18-457+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
460-477
|
1.000
|
1-459
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
55240.620
|
9.547
|
21.500
|
23.480
|
17.820
|
44.444
|
55.556
|
15.094
|
8.386
|
41.509
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
586.557
|
1.066
|
58.238
|
543.226
|
758.101
|
405.092
|
260.361
|
8.573
|
617.637
|
1339.964
|
1030.396
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.535
|
8.849
|
3.334
|
0.448
|
-0.890
|
-0.628
|
-5.672
|
5.070
|
— | — | — | — | — |
No JSON data available for plots.