Hg_chrom3_TN10mRNA_4533
Organism: Heterodera glycines Gene Locus: chr3:530243-532218 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.564 | 1.806 | 0.765 | 1.116 | 0.917 | 0.996 | 0.771 | 1.294 | 1.798 | 1.006 | 1.324 | 1.523 | 2.607 | 0.685 | 0.594 | 0.832 | 0.902 | 0.49 | 0.996 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4298
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKDFTEQGIEFGFHSLKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.163
|
0.080
|
0.010
|
0.200
|
0.653
|
0.195
|
0.620
|
0.051
|
0.415
|
0.503
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001174
|
1.000
|
4.000
|
Hsc_gene_16590.t1;Hsc_gene_16591.t1;Hsc_gene_17696.t1;Hsc_gene_17696.t2
|
Hsc_gene_16590.t1;Hsc_gene_16591.t1
|
— |
P91200.1 Galactoside 2-alpha-L-fucosyltransferase [Caenorhabditis elegans]
|
KAI1709431.1 glycosyl transferase family 11 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0008107|GO:0016020
|
GO:0008150_0.953|GO:0009987_0.571|GO:0065007_0.522|GO:0003674_0.520|GO:0050789_0.503
|
IPR002516+38-217+|IPR052501+9-213+
|
— |
PF01531+38-217+Glycosyl_transferase_family_11
|
— |
PTHR22898+9-213+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-309
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
35495.870
|
8.473
|
10.000
|
23.948
|
16.181
|
46.926
|
53.074
|
14.239
|
9.709
|
44.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
12.579
|
1.680
|
3.347
|
7.497
|
2.308
|
34.539
|
6.977
|
30.813
|
15.877
|
10.440
|
12.770
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.019
|
1.271
|
-1.730
|
3.918
|
-2.308
|
— |
-2.011
|
— | — | — | — | — |
No JSON data available for plots.