Hg_chrom3_TN10mRNA_4535
Organism: Heterodera glycines Gene Locus: chr3:539912-547507 Feature type: polypeptideProtein Sequence
Length: 688
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.592 | 1.217 | 1.031 | 0.501 | 0.775 | 1.453 | 0.882 | 1.744 | 0.969 | 1.218 | 0.661 | 2.137 | 1.413 | 1.09 | 1.424 | 1.142 | 1.072 | 0.859 | 0.559 | 0.385 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4300
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.637
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— |
RRRR
|
10-30
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.256
|
0.216
|
0.049
|
0.484
|
0.094
|
0.270
|
0.264
|
0.131
|
0.645
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007368
|
1.000
|
1.000
|
Hsc_gene_16583.t1
|
Hsc_gene_16583.t1
|
— |
Q21950.2 Putative selenium-binding protein [Caenorhabditis elegans]
|
KAI1732990.1 56kDa selenium binding protein (SBP56) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008430
|
GO:0008150_0.728|GO:0005575_0.718|GO:0110165_0.714|GO:0009987_0.684|GO:0003674_0.673|GO:0005622_0.650|GO:0005488_0.609
|
IPR008826+103-192_105-194_388-644+|IPR011044+313-588+
|
— |
PF05694+103-192_388-644+56kDa_selenium_binding_protein_(SBP56)
|
— |
PTHR23300+105-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-92;287-335;622-688
|
2.000
|
93-286;336-621
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
77039.470
|
8.630
|
19.000
|
25.145
|
10.610
|
50.581
|
49.419
|
14.826
|
10.320
|
50.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
559.534
|
78.987
|
133.626
|
49.096
|
16.815
|
13.506
|
37.596
|
145.780
|
26.994
|
2249.439
|
1296.963
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
-0.824
|
-1.336
|
-1.577
|
— |
1.486
|
3.333
|
-1.815
|
-4.361
|
— |
-4.842
|
— | — |
No JSON data available for plots.