Hg_chrom3_TN10mRNA_4551
Organism: Heterodera glycines Gene Locus: chr3:626123-631764 Feature type: polypeptideProtein Sequence
Length: 585
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 0.716 | 0.995 | 0.531 | 0.855 | 1.096 | 0.692 | 1.88 | 1.443 | 1.594 | 0.777 | 2.112 | 1.519 | 0.789 | 1.291 | 0.879 | 0.869 | 0.984 | 1.446 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4314
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKVIYEFFCIHKIGGKYRR
|
4-38
|
0.974
|
— | — | — | — |
0.000
|
— | — |
0.093
|
0.106
|
0.117
|
0.106
|
0.298
|
0.532
|
0.275
|
0.007
|
0.791
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007377
|
1.000
|
1.000
|
Hsc_gene_16602.t2
|
Hsc_gene_16602.t1;Hsc_gene_16602.t2;Hsc_gene_16602.t3
|
— |
Q622X0.2 Uncoordinated protein 58 [Caenorhabditis briggsae]
|
KAI3417530.1 Uncoordinated protein 58 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005267|GO:0016020|GO:0071805
|
GO:0008150_0.967|GO:0009987_0.896|GO:0003674_0.852|GO:0051179_0.845|GO:0006810_0.841|GO:0051234_0.841|GO:0055085_0.758|GO:0006811_0.749|GO:0034220_0.721|GO:0006812_0.713|GO:0030001_0.707|GO:0005215_0.699|GO:0022857_0.699|GO:0098660_0.699|GO:0098655_0.688|GO:0015075_0.682|GO:0098662_0.680|GO:0022803_0.679|GO:0015267_0.675|GO:0005216_0.671|GO:0006813_0.670|GO:0008324_0.665|GO:0015318_0.662|GO:0005261_0.649|GO:0071805_0.649|GO:0022890_0.648|GO:0046873_0.647|GO:0005575_0.632|GO:0110165_0.632|GO:0005267_0.625|GO:0015079_0.625|GO:0016020_0.617|GO:0071944_0.564|GO:0005886_0.559|GO:0065007_0.541
|
IPR003280+162-500_279-307_432-441+|IPR013099+266-323_399-466+
|
— |
PF07885+266-323_399-466+Ion_channel
|
— |
PTHR11003+162-500+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-85
|
1.000
|
86-585
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
67121.980
|
8.398
|
16.000
|
25.812
|
13.675
|
44.615
|
55.385
|
15.214
|
10.598
|
43.590
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
344.960
|
105.281
|
514.841
|
176.657
|
48.239
|
40.532
|
54.353
|
248.804
|
13.130
|
1053.586
|
607.677
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.060
|
0.609
|
-1.434
|
-1.903
|
— |
0.433
|
2.518
|
-2.054
|
-6.443
|
— |
-4.095
|
— | — |
No JSON data available for plots.