Hg_chrom3_TN10mRNA_4553
Organism: Heterodera glycines Gene Locus: chr3:641608-646249 Feature type: polypeptideProtein Sequence
Length: 508
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.526 | 1.282 | 0.931 | 0.339 | 0.82 | 1.464 | 0.844 | 2.461 | 1.094 | 0.878 | 0.597 | 1.158 | 1.914 | 0.984 | 1.125 | 0.872 | 0.936 | 0.895 | 1.969 | 1.795 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4316
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-24
|
0.853
|
0.779
|
0.000
|
0.000
|
0.287
|
0.149
|
0.036
|
0.239
|
0.241
|
0.301
|
0.134
|
0.005
|
0.311
|
0.623
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007378
|
1.000
|
1.000
|
Hsc_gene_16606.t1
|
Hsc_gene_16606.t1
|
— |
Q8BX37.2 Acid phosphatase type 7 [Mus musculus]
|
KAI1719822.1 calcineurin-like phosphoesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003993|GO:0016787|GO:0046872
|
GO:0008150_0.951|GO:0003674_0.761|GO:0003824_0.704|GO:0005575_0.588|GO:0110165_0.588|GO:0016787_0.582|GO:0009987_0.557|GO:0016788_0.533|GO:0008152_0.529|GO:0016791_0.511|GO:0042578_0.511|GO:0003993_0.507|GO:0005622_0.505|GO:0016020_0.501
|
IPR004843+171-375+|IPR008963+63-160+|IPR015914+68-159+|IPR025733+401-461+|IPR029052+166-471_172-452+|IPR041792+166-467+
|
— |
PF00149+171-375+Calcineurin-like_phosphoesterase|PF14008+401-461+Iron/zinc_purple_acid_phosphatase-like_protein_C|PF16656+68-159+Purple_acid_Phosphatase,_N-terminal_domain
|
— |
PTHR45867+51-478+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-508
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
59354.600
|
7.265
|
9.500
|
24.409
|
20.472
|
47.441
|
52.559
|
14.370
|
10.039
|
46.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
1301.750
|
487.973
|
983.461
|
487.856
|
705.138
|
903.271
|
1486.904
|
2114.589
|
360.781
|
2736.126
|
1718.121
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
-0.138
|
-0.904
|
0.499
|
0.372
|
0.729
|
1.113
|
— |
-3.045
|
— | — | — | — |