Hg_chrom3_TN10mRNA_4562
Organism: Heterodera glycines Gene Locus: chr3:689871-693485 Feature type: polypeptideProtein Sequence
Length: 386
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.934 | 0.602 | 0.612 | 0.357 | 0.993 | 1.993 | 0.37 | 2.591 | 1.036 | 1.4 | 0.864 | 0.914 | 1.295 | 0.947 | 1.48 | 1.073 | 0.892 | 1.374 | 0.598 | 0.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4325
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
— | — | — | — |
30-51
|
0.984
|
— | — |
0.000
|
— | — |
0.061
|
0.179
|
0.006
|
0.163
|
0.738
|
0.414
|
0.338
|
0.022
|
0.595
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003471
|
2.000
|
1.000
|
Hsc_gene_16621.t1
|
Hsc_gene_16621.t1
|
— |
Q27433.1 Mechanosensory protein 2 [Caenorhabditis elegans]
|
KAI1730475.1 SPFH domain / band 7 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0016020
|
GO:0005575_0.950|GO:0110165_0.950|GO:0016020_0.918|GO:0005886_0.858|GO:0071944_0.858|GO:0008150_0.808|GO:0009987_0.648|GO:0043226_0.597|GO:0003674_0.556|GO:0065007_0.556|GO:0043227_0.536|GO:0050789_0.528|GO:0005622_0.515
|
IPR001107+147-306_150-322+|IPR001972+154-176_203-224_238-255_258-281_282-300_301-322_326-349+|IPR018080+262-290+|IPR036013+181-313_186-296+|IPR043202+44-380+
|
SM00244+147-306+
|
PF01145+150-322+SPFH_domain_/_Band_7_family
|
G3DSA:3.30.479.30:FF:000002+186-296+band_7_protein_AGAP004871
|
PTHR10264+44-380+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-98;379-386
|
1.000
|
99-378
|
9oh9_P
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
43879.560
|
10.393
|
24.000
|
27.461
|
11.658
|
50.777
|
49.223
|
18.135
|
9.326
|
45.078
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
191.132
|
72.096
|
155.022
|
68.319
|
19.142
|
5.773
|
9.540
|
71.691
|
39.755
|
655.795
|
391.777
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
— |
-1.075
|
-1.870
|
-1.714
|
— |
3.530
|
-2.768
|
— | — | — | — | — |
No JSON data available for plots.