Hg_chrom3_TN10mRNA_4563
Organism: Heterodera glycines Gene Locus: chr3:689871-693485 Feature type: polypeptideProtein Sequence
Length: 366
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.953 | 0.635 | 0.497 | 0.377 | 0.956 | 2.032 | 0.39 | 2.596 | 0.971 | 1.403 | 0.869 | 0.964 | 1.366 | 0.946 | 1.561 | 1.054 | 0.851 | 1.449 | 0.42 | 0.241 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4325
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
— | — | — | — |
30-51
|
0.984
|
— | — |
0.000
|
— | — |
0.066
|
0.185
|
0.006
|
0.170
|
0.723
|
0.363
|
0.325
|
0.028
|
0.573
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003471
|
2.000
|
1.000
|
Hsc_gene_16621.t1
|
Hsc_gene_16621.t1
|
— |
Q27433.1 Mechanosensory protein 2 [Caenorhabditis elegans]
|
KAI1730475.1 SPFH domain / band 7 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0016020
|
GO:0005575_0.949|GO:0110165_0.949|GO:0016020_0.920|GO:0005886_0.859|GO:0071944_0.859|GO:0008150_0.818|GO:0009987_0.655|GO:0043226_0.594|GO:0003674_0.565|GO:0065007_0.563|GO:0043227_0.535|GO:0050789_0.534|GO:0005622_0.506
|
IPR001107+147-286_150-260+|IPR001972+154-176_203-224_238-255+|IPR036013+177-261_181-293+|IPR043202+44-360+
|
SM00244+147-286+
|
PF01145+150-260+SPFH_domain_/_Band_7_family
|
— |
PTHR10264+44-360+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-98;359-366
|
1.000
|
99-358
|
9oh9_P
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
41536.030
|
10.763
|
27.500
|
27.049
|
11.475
|
50.273
|
49.727
|
18.579
|
8.470
|
45.082
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
191.132
|
72.096
|
155.022
|
68.319
|
19.142
|
5.773
|
9.540
|
71.691
|
39.755
|
655.795
|
391.777
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
— |
-1.075
|
-1.870
|
-1.714
|
— |
3.530
|
-2.768
|
— | — | — | — | — |
No JSON data available for plots.