Hg_chrom3_TN10mRNA_4568
Organism: Heterodera glycines Gene Locus: chr3:711351-715722 Feature type: polypeptideProtein Sequence
Length: 583
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.137 | 1.037 | 0.717 | 1.124 | 0.858 | 2.683 | 0.98 | 2.401 | 0.534 | 1.02 | 0.598 | 1.413 | 0.953 | 0.528 | 1.225 | 1.103 | 0.844 | 0.884 | 0.264 | 0.706 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4330
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.866
|
0.092
|
0.023
|
0.256
|
0.024
|
0.013
|
0.020
|
0.011
|
0.063
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007382
|
1.000
|
1.000
|
Hsc_gene_16641.t1
|
Hsc_gene_16641.t1
|
— | — |
KAF7635308.1 C2H2-type domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+13-34_40-64_350-374_380-405_497-521_527-552+
|
SM00355+13-34_40-64_350-374_380-405_497-521_527-552+
|
— | — |
PTHR24390+148-546+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
144-339
|
2.000
|
1-143;340-583
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
64201.740
|
8.036
|
19.000
|
23.842
|
10.978
|
51.630
|
48.370
|
14.751
|
9.091
|
51.115
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
507.150
|
256.538
|
269.829
|
440.403
|
421.862
|
529.904
|
340.861
|
518.899
|
290.738
|
958.867
|
672.526
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.642
|
0.815
|
— |
0.344
|
-0.627
|
— |
-0.466
|
— | — | — | — | — |
No JSON data available for plots.