Hg_chrom3_TN10mRNA_4575
Organism: Heterodera glycines Gene Locus: chr3:787788-789553 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 0.954 | 1.865 | 0.177 | 1.197 | 0.789 | 0.855 | 1.282 | 1.254 | 1.04 | 1.554 | 2.112 | 1.994 | 0.592 | 0.837 | 0.806 | 0.588 | 0.777 | 0.789 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4337
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.266
|
0.188
|
0.038
|
0.415
|
0.157
|
0.381
|
0.269
|
0.014
|
0.825
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007386
|
1.000
|
1.000
|
Hsc_gene_16644.t1
|
Hsc_gene_16644.t1
|
— |
P36608.2 Neuronal calcium sensor 1 [Caenorhabditis elegans]
|
KAI1723592.1 EF-hand domain pair domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.759|GO:0110165_0.751|GO:0008150_0.746|GO:0005622_0.598|GO:0009987_0.575|GO:0003674_0.571|GO:0005737_0.544|GO:0016020_0.525
|
IPR002048+64-99_68-96_71-94_72-125_100-135_103-177_104-132_104-178_148-183_152-180+|IPR011992+5-190+|IPR018247+77-89_113-125+|IPR028846+10-189+
|
SM00054+68-96_104-132_152-180+
|
PF13405+71-94+EF-hand_domain|PF13499+103-177+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000009+5-193+Visinin-like_protein_1
|
PTHR23055+10-189+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-10
|
1.000
|
11-195
|
9gu6_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
22340.330
|
5.378
|
-3.500
|
34.359
|
13.333
|
50.769
|
49.231
|
16.923
|
17.436
|
45.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
290.680
|
70.978
|
884.681
|
318.228
|
134.645
|
68.971
|
136.427
|
1173.457
|
241.910
|
45.022
|
129.403
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.412
|
2.028
|
-1.367
|
-1.273
|
-0.951
|
0.995
|
3.986
|
-2.961
|
— | — | — | — | — |
No JSON data available for plots.