Hg_chrom3_TN10mRNA_4576
Organism: Heterodera glycines Gene Locus: chr3:791402-792028 Feature type: polypeptideProtein Sequence
Length: 96
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 0.969 | 1.326 | 0.359 | 1.389 | 2.137 | 0.62 | 0.521 | 0.463 | 0.845 | 0.947 | 2.451 | 1.736 | 1.402 | 2.126 | 0.446 | 0.512 | 0.947 | 0.801 | 0.613 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4338
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.541
|
0.346
|
0.051
|
0.498
|
0.113
|
0.120
|
0.067
|
0.020
|
0.078
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007385
|
2.000
|
0.000
|
0.000
|
Hsc_gene_16645.t1
|
— |
O62138.1 Acyl-coenzyme A oxidase acox-1.3 [Caenorhabditis elegans]
|
KAF7640472.1 Acyl-coenzyme A oxidase [Meloidogyne graminicola]
|
No
|
0.550
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.911|GO:0009987_0.856|GO:0008152_0.745|GO:0009058_0.745|GO:0044237_0.741|GO:0065007_0.676|GO:0044249_0.547|GO:1901135_0.534|GO:1901137_0.531|GO:0016137_0.527|GO:0016138_0.527|GO:1901657_0.527|GO:1901659_0.527|GO:1904069_0.527|GO:1904070_0.527|GO:0065008_0.507
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-96
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
11285.780
|
8.007
|
1.500
|
33.333
|
10.417
|
52.083
|
47.917
|
17.708
|
15.625
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
22.882
|
2.920
|
21.830
|
40.179
|
47.766
|
60.248
|
37.931
|
12.907
|
0.000
|
16.191
|
9.252
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.681
|
3.650
|
0.990
|
— | — |
-0.659
|
-2.327
|
1.695
|
— |
6.185
|
— | — | — |
No JSON data available for plots.