Hg_chrom3_TN10mRNA_4577
Organism: Heterodera glycines Gene Locus: chr3:794719-797180 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.73 | 0.786 | 0.439 | 1.333 | 0.242 | 0.867 | 0.748 | 2.174 | 1.396 | 1.371 | 0.439 | 2.273 | 2.684 | 0.65 | 1.775 | 0.966 | 1.109 | 1.025 | 1.486 | 0.426 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4339
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— | — |
20-41
|
0.995
|
88-123
|
0.974
|
— | — |
0.000
|
— | — |
0.097
|
0.256
|
0.027
|
0.247
|
0.093
|
0.183
|
0.222
|
0.117
|
0.486
|
0.307
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007387
|
2.000
|
0.000
|
0.000
|
— | — |
Q3YAW7.1 Solute carrier family 22 member 7 [Oryctolagus cuniculus]
|
KAI1724046.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.944|GO:0009987_0.886|GO:0003674_0.852|GO:0032501_0.786|GO:0051179_0.748|GO:0006810_0.741|GO:0051234_0.741|GO:0055085_0.704|GO:0015695_0.670|GO:0005215_0.667|GO:0022857_0.667|GO:0015101_0.650|GO:0005575_0.633|GO:0110165_0.628|GO:0016020_0.575|GO:0071944_0.532|GO:0005886_0.513
|
IPR011701+1-78+|IPR036259+1-78_1-94+
|
— |
PF07690+1-78+Major_Facilitator_Superfamily
|
— |
PTHR23511+2-79+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-207
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.508
|
23759.060
|
11.025
|
20.500
|
19.807
|
17.391
|
40.097
|
59.903
|
15.942
|
3.865
|
45.894
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
9.119
|
3.516
|
7.486
|
3.671
|
2.843
|
1.621
|
26.459
|
17.387
|
9.605
|
9.072
|
9.300
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
4.032
|
3.312
|
0.747
|
— | — | — | — | — |
No JSON data available for plots.