Hg_chrom3_TN10mRNA_4579
Organism: Heterodera glycines Gene Locus: chr3:800570-805362 Feature type: polypeptideProtein Sequence
Length: 400
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.308 | 0.872 | 0.591 | 0.862 | 0.875 | 0.962 | 0.536 | 1.125 | 1.0 | 1.351 | 0.644 | 2.647 | 1.875 | 0.577 | 1.02 | 0.929 | 1.107 | 1.061 | 0.962 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4341
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.500
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.086
|
0.081
|
0.021
|
0.148
|
0.160
|
0.331
|
0.391
|
0.091
|
0.718
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007387
|
2.000
|
0.000
|
0.000
|
Hsc_gene_16649.t1;Hsc_gene_16650.t1
|
— |
Q3YAW7.1 Solute carrier family 22 member 7 [Oryctolagus cuniculus]
|
KAI1724046.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.955|GO:0009987_0.902|GO:0003674_0.809|GO:0006810_0.783|GO:0051179_0.783|GO:0051234_0.783|GO:0005575_0.742|GO:0110165_0.740|GO:0055085_0.736|GO:0016020_0.710|GO:0005215_0.689|GO:0022857_0.689|GO:0005886_0.660|GO:0071944_0.660
|
IPR005828+160-374+|IPR020846+83-400+|IPR036259+136-399_155-387+
|
— |
PF00083+160-374+Sugar_(and_other)_transporter
|
— |
PTHR24064+67-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-47
|
1.000
|
48-400
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
45028.300
|
7.993
|
7.500
|
20.000
|
14.250
|
40.750
|
59.250
|
11.500
|
8.500
|
48.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
160.730
|
142.829
|
177.304
|
162.165
|
110.378
|
78.581
|
144.843
|
93.102
|
105.678
|
282.986
|
206.997
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.586
|
— |
0.893
|
— |
0.779
|
— | — | — | — | — |
No JSON data available for plots.