Hg_chrom3_TN10mRNA_4597
Organism: Heterodera glycines Gene Locus: chr3:952847-954339 Feature type: polypeptideProtein Sequence
Length: 110
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 0.211 | 0.661 | 1.254 | 0.455 | 0.932 | 0.974 | 2.727 | 2.626 | 1.474 | 0.413 | 1.604 | 1.515 | 0.699 | 0.742 | 0.519 | 0.745 | 1.515 | 3.497 | 0.267 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4358
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-20
|
0.998
|
0.980
|
2.000
|
2.000
|
0.097
|
0.107
|
0.101
|
0.168
|
0.449
|
0.517
|
0.429
|
0.024
|
0.542
|
0.225
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007392
|
1.000
|
1.000
|
Hsc_gene_16669.t1
|
Hsc_gene_16669.t1
|
— |
Q20516.1 UPF0057 membrane protein F47B7.1 [Caenorhabditis elegans]
|
KAH7700558.1 Protein F47B7.1 [Aphelenchus avenae];KAH7708305.1 Protein F47B7.1 [Aphelenchus avenae]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.712|GO:0110165_0.700|GO:0008150_0.613|GO:0016020_0.537
|
IPR000612+54-106_58-108_63-78+
|
— |
PF01679+58-108+Proteolipid_membrane_potential_modulator
|
— |
PTHR21659+54-106+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.513
|
12351.740
|
7.374
|
3.000
|
18.182
|
16.364
|
30.909
|
69.091
|
11.818
|
6.364
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
7298.633
|
15637.063
|
21284.801
|
5094.831
|
2052.815
|
3818.914
|
1389.066
|
23187.278
|
3501.677
|
2130.972
|
2718.417
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.217
|
-1.755
|
-1.955
|
-1.343
|
0.909
|
-1.449
|
2.503
|
-3.921
|
— | — | — | — | — |