Hg_chrom3_TN10mRNA_4598
Organism: Heterodera glycines Gene Locus: chr3:957413-959809 Feature type: polypeptideProtein Sequence
Length: 137
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 0.849 | 0.929 | 1.258 | 0.487 | 1.123 | 0.521 | 2.555 | 2.595 | 1.578 | 0.332 | 3.006 | 2.23 | 0.842 | 0.745 | 0.417 | 0.479 | 0.774 | 2.246 | 0.859 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4359
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.153
|
0.108
|
0.030
|
0.281
|
0.497
|
0.492
|
0.572
|
0.035
|
0.272
|
0.538
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003479
|
1.000
|
2.000
|
Hsc_gene_16668.t1;Hsc_gene_16668.t2
|
Hsc_gene_16668.t1;Hsc_gene_16668.t2
|
— |
Q20516.1 UPF0057 membrane protein F47B7.1 [Caenorhabditis elegans]
|
KAH7700558.1 Protein F47B7.1 [Aphelenchus avenae];KAH7708305.1 Protein F47B7.1 [Aphelenchus avenae]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.719|GO:0050896_0.573|GO:0005575_0.516|GO:0110165_0.511
|
IPR000612+82-132_84-134_89-104+
|
— |
PF01679+84-134+Proteolipid_membrane_potential_modulator
|
— |
PTHR21659+82-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-137
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
15958.950
|
6.589
|
0.500
|
18.978
|
18.978
|
32.847
|
67.153
|
10.949
|
8.029
|
39.416
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
purple
|
377.797
|
299.467
|
255.351
|
155.203
|
254.570
|
975.737
|
281.589
|
552.120
|
1.896
|
611.176
|
350.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.460
|
-1.085
|
-0.609
|
0.681
|
1.952
|
-1.782
|
-0.920
|
-0.831
|
-8.493
|
6.658
|
— | — | — |
No JSON data available for plots.