Hg_chrom3_TN10mRNA_4602
Organism: Heterodera glycines Gene Locus: chr3:970613-974890 Feature type: polypeptideProtein Sequence
Length: 574
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.033 | 1.215 | 0.95 | 0.721 | 1.103 | 1.027 | 0.684 | 1.568 | 1.394 | 1.177 | 0.871 | 1.537 | 1.452 | 0.536 | 0.853 | 0.996 | 0.771 | 0.897 | 1.206 | 1.281 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4363
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
2.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-20
|
0.935
|
0.998
|
0.000
|
0.000
|
0.311
|
0.228
|
0.065
|
0.430
|
0.266
|
0.200
|
0.218
|
0.109
|
0.309
|
0.379
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001904
|
1.000
|
3.000
|
Hsc_gene_16560.t1;Hsc_gene_16661.t1;Hsc_gene_16661.t2
|
Hsc_gene_16661.t1;Hsc_gene_16661.t2
|
— | — |
KAI3415228.1 hypothetical protein GPALN_004840 [Globodera pallida]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-574
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.503
|
64946.920
|
6.323
|
-2.000
|
24.913
|
14.286
|
45.819
|
54.181
|
13.066
|
11.847
|
47.561
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
667.931
|
7.504
|
19.337
|
3.628
|
7.728
|
38.176
|
3.256
|
103.894
|
67.034
|
2803.103
|
1630.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.134
|
-1.186
|
-2.305
|
1.061
|
2.318
|
-3.541
|
1.345
|
-4.855
|
-5.501
|
— |
-7.959
|
— | — |