SCN Proteipedia

Hg_chrom3_TN10mRNA_4603

Organism: Heterodera glycines Gene Locus: chr3:974942-979962 Feature type: polypeptide

Protein Sequence

Length: 477

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.804	1.219	0.724	0.723	0.804	1.559	0.874	1.468	0.932	1.417	0.762	2.22	1.805	0.766	0.984	1.018	1.065	0.826	0.484	0.617	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4364	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKVNLMSEKISFKHKNK	—	—	—	—	—	—	0.000	—	—	0.773	0.088	0.013	0.449	0.158	0.057	0.107	0.006	0.149	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007393	1.000	1.000	Hsc_gene_16659.t1	Hsc_gene_16659.t1;Hsc_gene_16660.t1	—	Q98SW2.1 Hypoxia-inducible factor 1-alpha [Oncorhynchus mykiss]	KAI3417558.1 putative secreted beta-glucosidase sim1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006355\|GO:0046983	GO:0008150_0.894\|GO:0009987_0.839\|GO:0005575_0.760\|GO:0003674_0.757\|GO:0110165_0.757\|GO:0065007_0.755\|GO:0050789_0.744\|GO:0050794_0.723\|GO:0008152_0.694\|GO:0005488_0.683\|GO:0016020_0.677\|GO:0044237_0.675\|GO:0005622_0.674\|GO:0044238_0.667\|GO:0009058_0.665\|GO:0043170_0.664\|GO:0044249_0.652\|GO:0019222_0.643\|GO:0009059_0.638\|GO:0031323_0.634\|GO:0010467_0.631\|GO:0032501_0.631\|GO:0060255_0.626\|GO:0043226_0.622\|GO:0009889_0.616\|GO:0010556_0.616\|GO:0031326_0.616\|GO:0010468_0.613\|GO:0080090_0.608\|GO:0006139_0.605\|GO:0043229_0.604\|GO:0034654_0.598\|GO:0090304_0.592\|GO:0043227_0.590\|GO:0016070_0.588\|GO:0141187_0.588\|GO:0032774_0.587\|GO:0019219_0.581\|GO:0051252_0.580\|GO:0006351_0.579\|GO:0006355_0.576\|GO:2001141_0.576\|GO:0043231_0.572\|GO:0032502_0.533\|GO:0048856_0.533\|GO:0007275_0.510	IPR000014+173-239_178-241_182-263_304-370_313-395_326-372+\|IPR011598+55-108+\|IPR013767+177-238+\|IPR035965+182-264_315-396+\|IPR036638+63-107+	SM00091+173-239_304-370+	PF00989+177-238+PAS_fold\|PF14598+315-421+PAS_domain	—	PTHR23043+67-444+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-66	1.000	67-477	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.798	53258.090	8.338	12.000	21.593	12.159	46.541	53.459	12.788	8.805	48.637

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	lightyellow	231.801	13.136	16.435	18.893	22.892	112.977	14.410	1337.747	1.028	437.174	250.254

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	2.315	-2.964	3.471	-6.400	-8.527	4.101	-3.831	—	—

No JSON data available for plots.

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