Hg_chrom3_TN10mRNA_4616
Organism: Heterodera glycines Gene Locus: chr3:1068383-1072437 Feature type: polypeptideProtein Sequence
Length: 263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.326 | 1.037 | 0.918 | 2.408 | 1.267 | 0.498 | 0.57 | 1.098 | 0.668 | 0.749 | 2.908 | 1.479 | 0.877 | 0.776 | 1.086 | 0.81 | 0.749 | 1.462 | 0.559 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4376
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.787
|
0.358
|
0.036
|
0.630
|
0.085
|
0.039
|
0.132
|
0.015
|
0.047
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003474
|
2.000
|
1.000
|
Hsc_gene_21684.t1
|
Hsc_gene_21684.t1
|
— | — |
KAI1690553.1 skp1 family, dimerization domain-containing protein [Ditylenchus destructor]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.861|GO:0009987_0.759|GO:0065007_0.694|GO:0050789_0.676|GO:0050794_0.613|GO:0050896_0.544|GO:0005575_0.533|GO:0110165_0.526|GO:0051716_0.512
|
IPR001232+50-167+|IPR011333+45-217_55-120+|IPR016072+169-212+|IPR016897+54-211+|IPR036296+141-212+
|
SM00512+50-167+
|
PF01466+169-212+Skp1_family,_dimerisation_domain
|
— |
PTHR11165+54-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-53;210-263
|
1.000
|
54-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.943
|
30190.550
|
4.036
|
-28.500
|
30.038
|
10.266
|
53.232
|
46.768
|
9.886
|
20.152
|
46.768
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
salmon
|
480.558
|
206.721
|
198.614
|
281.004
|
330.884
|
301.255
|
733.233
|
285.430
|
59.220
|
1181.600
|
700.580
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.291
|
0.305
|
0.612
|
0.203
|
— |
1.294
|
— |
1.504
|
-4.470
|
2.447
|
— | — |
3.320
|
No JSON data available for plots.