Hg_chrom3_TN10mRNA_4622
Organism: Heterodera glycines Gene Locus: chr3:1117924-1120763 Feature type: polypeptideProtein Sequence
Length: 383
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 1.093 | 0.38 | 0.81 | 0.218 | 1.138 | 0.715 | 1.044 | 1.741 | 1.729 | 0.435 | 1.997 | 1.523 | 0.904 | 0.959 | 1.082 | 1.412 | 0.989 | 1.205 | 0.998 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4380
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
40-60
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.108
|
0.154
|
0.029
|
0.095
|
0.330
|
0.173
|
0.106
|
0.074
|
0.798
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000800
|
1.000
|
5.000
|
Hsc_gene_16678.t1;Hsc_gene_16679.t1;Hsc_gene_16681.t1;Hsc_gene_16681.t2;Hsc_gene_16684.t1
|
Hsc_gene_16681.t1;Hsc_gene_16681.t2;Hsc_gene_16683.t1;Hsc_gene_16684.t1
|
— | — |
KAI1703735.1 DAF-16/FOXO Controlled, germline Tumor affecting [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-383
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
42499.060
|
9.905
|
20.000
|
13.055
|
12.533
|
38.381
|
61.619
|
9.661
|
3.394
|
50.131
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
713.448
|
3.255
|
13.245
|
23.377
|
8.011
|
3.767
|
5.185
|
13.712
|
28.156
|
3073.763
|
1768.503
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.790
|
2.700
|
0.929
|
-1.577
|
— | — |
1.760
|
-1.256
|
— | — |
-6.354
|
— | — |
No JSON data available for plots.