Hg_chrom3_TN10mRNA_4630
Organism: Heterodera glycines Gene Locus: chr3:1143839-1146986 Feature type: polypeptideProtein Sequence
Length: 480
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.744 | 1.793 | 0.833 | 0.359 | 1.667 | 3.045 | 0.322 | 0.729 | 0.926 | 0.788 | 1.136 | 0.735 | 0.637 | 0.841 | 0.68 | 1.22 | 0.307 | 0.537 | 1.282 | 0.368 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4388
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.974
|
1.000
|
0.000
|
0.000
|
0.156
|
0.329
|
0.036
|
0.363
|
0.158
|
0.149
|
0.177
|
0.035
|
0.217
|
0.615
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001907
|
1.000
|
3.000
|
Hsc_gene_16688.t1;Hsc_gene_16688.t2;Hsc_gene_16688.t3
|
— | — | — |
KAF7640507.1 C-type lectin domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.869|GO:0110165_0.867|GO:0016020_0.791|GO:0071944_0.740|GO:0005886_0.723|GO:0008150_0.661|GO:0003674_0.636|GO:0009987_0.622|GO:0005622_0.591|GO:0005488_0.576|GO:0043226_0.534|GO:0043229_0.506
|
IPR001304+43-186_56-172_62-174+|IPR016186+41-198+|IPR016187+51-188+|IPR050828+3-194+
|
SM00034+43-186+
|
PF00059+62-174+Lectin_C-type_domain
|
— |
PTHR45710+3-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
207-480
|
1.000
|
1-206
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
53232.460
|
4.770
|
-14.500
|
26.875
|
6.667
|
56.875
|
43.125
|
12.292
|
14.583
|
49.375
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
178.072
|
188.548
|
352.514
|
248.199
|
162.016
|
243.277
|
11.570
|
200.497
|
32.592
|
227.140
|
143.762
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
0.259
|
-0.398
|
-0.647
|
0.602
|
-4.385
|
-0.386
|
-3.973
|
— | — | — | — | — |