Hg_chrom3_TN10mRNA_4651
Organism: Heterodera glycines Gene Locus: chr3:1265294-1269463 Feature type: polypeptideProtein Sequence
Length: 452
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 1.235 | 0.563 | 1.068 | 0.442 | 1.078 | 0.448 | 0.553 | 1.967 | 1.405 | 0.469 | 2.343 | 1.721 | 0.596 | 1.219 | 1.517 | 1.306 | 1.073 | 1.191 | 0.586 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4409
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
72-92
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.055
|
0.145
|
0.007
|
0.137
|
0.138
|
0.271
|
0.183
|
0.008
|
0.894
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007405
|
1.000
|
1.000
|
Hsc_gene_16697.t1
|
Hsc_gene_16697.t1
|
— |
Q18534.1 Neuropeptide receptor npr-1 [Caenorhabditis elegans]
|
ACJ72212.1 npr-1 [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0004983|GO:0007186|GO:0016020
|
GO:0008150_0.937|GO:0009987_0.904|GO:0065007_0.826|GO:0050789_0.805|GO:0050896_0.796|GO:0005575_0.794|GO:0110165_0.794|GO:0050794_0.780|GO:0003674_0.779|GO:0007154_0.768|GO:0023052_0.767|GO:0051716_0.755|GO:0060089_0.731|GO:0038023_0.727|GO:0007165_0.718|GO:0004888_0.695|GO:0005886_0.690|GO:0016020_0.690|GO:0071944_0.690|GO:0007186_0.685|GO:0004930_0.619|GO:0005488_0.571|GO:0032501_0.534
|
IPR000276+52-76_61-397_67-382_85-106_130-152_136-152_217-240_322-346_364-390+|IPR000611+77-89_107-119_130-145_369-378_380-393+|IPR017452+67-382+
|
SM01381+61-397+
|
PF00001+67-382+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24235+31-426+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-452
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.851
|
50832.540
|
9.336
|
17.500
|
15.929
|
10.841
|
44.027
|
55.973
|
10.177
|
5.752
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
285.162
|
159.069
|
230.914
|
92.182
|
33.859
|
30.464
|
56.989
|
146.750
|
387.946
|
675.289
|
552.142
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.309
|
-0.924
|
-1.216
|
-1.473
|
— |
0.911
|
2.171
|
-1.227
|
— | — |
-4.159
|
— | — |
No JSON data available for plots.