Hg_chrom3_TN10mRNA_4652
Organism: Heterodera glycines Gene Locus: chr3:1278094-1280506 Feature type: polypeptideProtein Sequence
Length: 393
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.302 | 1.302 | 1.203 | 0.175 | 1.527 | 0.718 | 0.424 | 0.127 | 0.848 | 0.481 | 1.426 | 4.64 | 0.636 | 0.832 | 1.246 | 0.327 | 2.002 | 1.002 | 0.587 | 0.299 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4410
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
HSP4|AF273731.2#tn8jg18135.t1
|
HSP4|AF2737312#tn8jg18135t1
|
— |
Hsc_gene_16698
|
Hg_chrom3_TN10mRNA_4652
|
6-pJ2_J3_J4_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
— |
9-29
|
0.932
|
— | — |
1-21
|
0.994
|
1.000
|
0.000
|
0.000
|
0.253
|
0.388
|
0.046
|
0.326
|
0.148
|
0.021
|
0.076
|
0.011
|
0.181
|
0.859
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003455
|
2.000
|
1.000
|
Hsc_gene_16698.t1
|
— | — | — |
AVA09700.1 putative effector protein [Heterodera avenae]
|
CIW26514
|
0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
74-300
|
2.000
|
1-73;301-393
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
44088.460
|
6.214
|
-0.500
|
31.552
|
4.326
|
54.453
|
45.547
|
15.776
|
15.776
|
52.926
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
21365.539
|
4.454
|
15.473
|
170.364
|
91184.051
|
2395.517
|
75.513
|
784.765
|
2.056
|
57986.390
|
33135.961
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.570
|
5.123
|
3.570
|
9.033
|
-5.234
|
-4.981
|
-1.725
|
-3.235
|
-14.851
|
6.472
|
— | — | — |