SCN Proteipedia

Hg_chrom3_TN10mRNA_4655

Organism: Heterodera glycines Gene Locus: chr3:1292458-1298630 Feature type: polypeptide

Protein Sequence

Length: 812

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.773	1.088	1.232	0.637	1.149	1.326	0.704	1.724	1.259	1.681	1.045	1.159	1.163	0.497	1.357	0.809	0.767	0.709	0.758	0.652	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4413	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom3_TN10mRNA_4655	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.642	0.217	0.025	0.462	0.104	0.057	0.057	0.023	0.088	0.067

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000797	5.000	1.000	Hsc_gene_5886.t1	Hsc_gene_26372.t1;Hsc_gene_26372.t2;Hsc_gene_5886.t1	—	Q7ZU90.1 Chromodomain-helicase-DNA-binding protein 1-like [Danio rerio]	KAI1724613.1 type III restriction enzyme, res subunit family protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003678\|GO:0005524\|GO:0006281\|GO:0006338\|GO:0140658	GO:0008150_0.899\|GO:0009987_0.852\|GO:0005575_0.803\|GO:0110165_0.792\|GO:0005622_0.757\|GO:0003674_0.714\|GO:0043226_0.687\|GO:0016020_0.686\|GO:0043229_0.678\|GO:0065007_0.669\|GO:0050789_0.650\|GO:0005488_0.643\|GO:0043227_0.616\|GO:0050794_0.608\|GO:0043231_0.588\|GO:0008152_0.548\|GO:0044238_0.527\|GO:0005634_0.522\|GO:0043170_0.508	IPR000330+27-303+\|IPR001650+327-437_327-487_353-437+\|IPR014001+20-210_36-196+\|IPR027417+17-234_236-478_240-536+\|IPR031053+18-568+\|IPR038718+25-235+\|IPR043472+608-808_609-796+\|IPR049730+316-448+	SM00487+20-210+\|SM00490+353-437+	PF00176+27-303+SNF2-related_domain\|PF00271+327-437+Helicase_conserved_C-terminal_domain	—	PTHR47157+18-568+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	506-556;810-812	2.000	1-505;557-809	5jxt_M	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.566	92689.920	7.461	13.000	30.665	10.837	50.862	49.138	16.995	13.670	43.473

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	grey	1505.173	3098.440	927.905	1078.737	1266.688	2492.133	1603.282	2597.443	873.949	1030.434	963.369

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.969	-1.659	0.326	0.200	0.991	-0.626	—	-0.551	—	—	—	—	—

No JSON data available for plots.

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