Hg_chrom3_TN10mRNA_4669
Organism: Heterodera glycines Gene Locus: chr3:1354392-1356719 Feature type: polypeptideProtein Sequence
Length: 406
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.544 | 0.974 | 1.164 | 0.679 | 0.452 | 1.137 | 0.528 | 0.985 | 1.478 | 1.764 | 0.746 | 1.449 | 1.847 | 1.232 | 1.458 | 0.915 | 0.525 | 1.008 | 2.653 | 0.652 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4426
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KQRRPRKK,RRFDLRVDEHFKTRKWRM
|
32-66
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.322
|
0.311
|
0.066
|
0.332
|
0.382
|
0.225
|
0.212
|
0.091
|
0.152
|
0.509
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000085
|
2.000
|
14.000
|
Hsc_gene_11020.t1;Hsc_gene_13615.t1;Hsc_gene_13616.t1;Hsc_gene_16435.t1;Hsc_gene_16717.t1;Hsc_gene_26224.t1;Hsc_gene_26225.t1;Hsc_gene_26228.t1;Hsc_gene_26258.t1;Hsc_gene_26568.t1;Hsc_gene_26568.t2;Hsc_gene_4055.t1;Hsc_gene_4412.t1;Hsc_gene_9535.t1
|
— | — | — |
KAI3411078.1 hypothetical protein GPALN_003163 [Globodera pallida]
|
MBK8701476
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
398-406
|
1.000
|
1-397
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
47263.330
|
9.628
|
16.000
|
23.153
|
14.286
|
41.379
|
58.621
|
14.039
|
9.113
|
44.335
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
6.643
|
1.684
|
3.175
|
9.662
|
23.963
|
16.125
|
8.116
|
14.781
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.386
|
1.722
|
1.284
|
— |
-0.978
|
— | — | — | — | — | — | — |
No JSON data available for plots.