Hg_chrom3_TN10mRNA_4683
Organism: Heterodera glycines Gene Locus: chr3:1472697-1473352 Feature type: polypeptideProtein Sequence
Length: 112
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.557 | 1.246 | 0.487 | 3.079 | 0.893 | 0.916 | 1.063 | 0.893 | 0.794 | 1.569 | 0.135 | 2.101 | 1.736 | 1.717 | 0.182 | 0.383 | 0.146 | 1.218 | 1.374 | 0.263 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4439
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-22
|
0.996
|
1.000
|
0.000
|
0.000
|
0.410
|
0.207
|
0.010
|
0.280
|
0.137
|
0.130
|
0.123
|
0.023
|
0.219
|
0.734
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007416
|
1.000
|
1.000
|
Hsc_gene_16643.t1
|
— | — | — |
AAN46118.1 intermediate filament protein HG-IF1 [Heterodera glycines]
|
WP_159401330
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.887|GO:0110165_0.883|GO:0005622_0.693|GO:0043226_0.644|GO:0043229_0.624|GO:0043228_0.553|GO:0043232_0.553|GO:0099080_0.546|GO:0005856_0.540|GO:0005882_0.540|GO:0045111_0.540|GO:0099081_0.540|GO:0099512_0.540|GO:0099513_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-112
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
11801.870
|
3.991
|
-6.000
|
11.607
|
10.714
|
24.107
|
75.893
|
3.571
|
8.036
|
59.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
10.740
|
4.027
|
16.904
|
10.237
|
5.130
|
8.106
|
2.834
|
6.554
|
6.362
|
22.045
|
15.324
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.831
|
1.205
|
— |
-1.030
|
— |
-1.514
|
— | — | — | — | — | — | — |