Hg_chrom3_TN10mRNA_4692
Organism: Heterodera glycines Gene Locus: chr3:1504235-1507242 Feature type: polypeptideProtein Sequence
Length: 268
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.128 | 0.868 | 0.204 | 1.415 | 0.187 | 1.244 | 0.888 | 1.493 | 2.653 | 1.916 | 0.226 | 0.878 | 2.28 | 0.431 | 0.609 | 1.066 | 0.918 | 0.848 | 1.435 | 0.549 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4448
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.827
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
— |
45-78
|
0.931
|
13-33
|
0.994
|
1-21
|
0.513
|
0.694
|
6.000
|
6.000
|
0.042
|
0.035
|
0.009
|
0.165
|
0.345
|
0.560
|
0.354
|
0.004
|
0.639
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001909
|
3.000
|
1.000
|
Hsc_gene_16739.t1
|
Hsc_gene_16739.t1
|
— |
Q6INU7.1 Putative ferric-chelate reductase 1 [Xenopus laevis]
|
KAF7640517.1 Cytochrome b561 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0140575
|
GO:0008150_0.741|GO:0005575_0.728|GO:0110165_0.726|GO:0016020_0.691|GO:0003674_0.633|GO:0071944_0.541|GO:0005886_0.540|GO:0042592_0.503
|
IPR006593+10-229_50-190_51-190+|IPR045150+9-230+
|
SM00665+50-190+
|
PF03188+51-190+Eukaryotic_cytochrome_b561
|
— |
PTHR15422+9-230+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-268
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
29298.890
|
8.432
|
10.000
|
9.701
|
14.925
|
31.343
|
68.657
|
7.463
|
2.239
|
47.015
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
83.487
|
8.729
|
31.246
|
8.366
|
2.476
|
2.227
|
7.401
|
6.706
|
11.713
|
331.288
|
194.327
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.609
|
— |
-1.792
|
-1.788
|
— |
1.742
|
— | — |
-4.927
|
— |
-6.804
|
— | — |