Hg_chrom3_TN10mRNA_4696
Organism: Heterodera glycines Gene Locus: chr3:1517084-1522018 Feature type: polypeptideProtein Sequence
Length: 467
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.672 | 1.145 | 1.168 | 1.994 | 0.999 | 1.647 | 0.51 | 2.463 | 0.857 | 1.157 | 0.746 | 1.008 | 1.368 | 0.782 | 1.486 | 1.162 | 0.562 | 0.649 | 1.153 | 0.819 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4451
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.337
|
0.108
|
0.010
|
0.650
|
0.080
|
0.224
|
0.163
|
0.039
|
0.264
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007422
|
1.000
|
1.000
|
Hsc_gene_16746.t1
|
Hsc_gene_16746.t1;Hsc_gene_16747.t1
|
— |
Q07E40.1 Testin [Neofelis nebulosa]
|
KAI1726328.1 LIM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.825|GO:0005575_0.808|GO:0110165_0.806|GO:0005622_0.721|GO:0009987_0.721|GO:0065007_0.601|GO:0050789_0.586|GO:0050794_0.579|GO:0016020_0.528|GO:0043226_0.507
|
IPR001781+276-342_277-336_293-339_343-403_344-396_345-379_345-401_404-459_405-458+|IPR010442+144-262_155-247+|IPR047120+32-465+
|
SM00132+277-336_344-396_404-459+
|
PF00412+293-339_345-401_405-458+LIM_domain|PF06297+155-247+PET_Domain
|
G3DSA:2.10.110.10:FF:000005+342-400+Testin_isoform_1
|
PTHR24211+32-465+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
181-228
|
2.000
|
1-180;229-467
|
2xqn_T
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
53988.900
|
7.315
|
10.500
|
29.550
|
14.133
|
52.463
|
47.537
|
17.131
|
12.420
|
47.109
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
588.459
|
145.911
|
665.461
|
139.346
|
144.721
|
357.473
|
377.813
|
610.882
|
42.573
|
1626.978
|
947.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.961
|
— |
-2.148
|
— |
1.319
|
— |
0.681
|
— |
-5.394
|
— | — | — | — |
No JSON data available for plots.