Hg_chrom3_TN10mRNA_4744
Organism: Heterodera glycines Gene Locus: chr3:1798321-1802007 Feature type: polypeptideProtein Sequence
Length: 433
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 1.558 | 1.05 | 0.319 | 1.27 | 1.54 | 0.522 | 1.501 | 1.694 | 1.155 | 1.82 | 0.815 | 2.309 | 0.577 | 0.471 | 0.693 | 0.454 | 0.805 | 0.888 | 0.747 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4494
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
nucleus
|
KRINCAFLNFGQALAKRLK,KNRPKKREKLKAIGHIQNK
|
— | — | — | — |
1-25
|
0.949
|
0.819
|
0.000
|
0.000
|
0.661
|
0.266
|
0.030
|
0.536
|
0.109
|
0.099
|
0.079
|
0.021
|
0.234
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000279
|
3.000
|
6.000
|
Hsc_gene_11148.t1;Hsc_gene_16790.t1;Hsc_gene_16798.t1;Hsc_gene_22693.t1;Hsc_gene_23710.t1;Hsc_gene_8518.t2
|
— | — | — |
KAI3421122.1 hypothetical protein GPALN_014750 [Globodera pallida]
|
WP_340430813
|
0.380
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-433
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
50396.870
|
8.667
|
10.500
|
30.716
|
15.012
|
51.039
|
48.961
|
17.321
|
13.395
|
39.492
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
735.764
|
3.228
|
597.452
|
245.369
|
29.944
|
1.720
|
1.019
|
8.383
|
3667.095
|
135.978
|
1649.314
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.310
|
6.116
|
-1.176
|
-3.068
|
-4.105
|
— | — |
-2.906
|
4.602
|
-3.722
|
— | — | — |