Hg_chrom3_TN10mRNA_4746
Organism: Heterodera glycines Gene Locus: chr3:1809610-1810464 Feature type: polypeptideProtein Sequence
Length: 108
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 1.292 | 0.842 | 0.0 | 1.235 | 0.0 | 0.992 | 0.926 | 2.058 | 1.502 | 0.982 | 1.089 | 1.8 | 1.246 | 0.756 | 0.794 | 0.455 | 1.684 | 0.0 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4496
|
— | — |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.663
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.504
|
0.352
|
0.222
|
0.535
|
0.117
|
0.078
|
0.095
|
0.143
|
0.149
|
0.356
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001178
|
4.000
|
1.000
|
Hsc_gene_16802.t1
|
— | — |
Q95NM6.1 Endonuclease G, mitochondrial [Caenorhabditis elegans]
|
AVA09693.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0016787|GO:0046872
|
GO:0005575_0.916|GO:0110165_0.910|GO:0005622_0.832|GO:0016020_0.817|GO:0005737_0.816|GO:0043226_0.782|GO:0043229_0.771|GO:0043227_0.751|GO:0043231_0.751|GO:0008150_0.678|GO:0003674_0.636|GO:0009987_0.607|GO:0005739_0.579|GO:0003824_0.521|GO:0008152_0.509|GO:0016787_0.504
|
IPR001604+5-78+|IPR040255+7-78+|IPR044925+11-85+|IPR044929+1-94+
|
— |
PF01223+5-78+DNA/RNA_non-specific_endonuclease
|
— |
PTHR13966+7-78+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-108
|
5gkp_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
11850.870
|
5.694
|
-1.000
|
24.074
|
10.185
|
37.963
|
62.037
|
12.037
|
12.037
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
54.075
|
20.498
|
27.533
|
26.138
|
33.868
|
23.731
|
47.440
|
26.998
|
49.731
|
121.953
|
91.001
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.010
|
— |
0.956
|
— | — | — | — | — |
No JSON data available for plots.