Hg_chrom3_TN10mRNA_4747
Organism: Heterodera glycines Gene Locus: chr3:1810762-1813476 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 0.64 | 1.056 | 0.738 | 1.325 | 1.255 | 0.437 | 0.765 | 1.019 | 1.033 | 1.344 | 1.259 | 0.849 | 1.353 | 1.56 | 1.136 | 0.752 | 0.695 | 1.176 | 0.809 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4497
|
— | — |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.858
|
0.099
|
0.015
|
0.299
|
0.041
|
0.044
|
0.092
|
0.004
|
0.043
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003495
|
2.000
|
1.000
|
Hsc_gene_16801.t1
|
Hsc_gene_16801.t1
|
— |
Q21755.1 Nitric oxide synthase-interacting protein homolog [Caenorhabditis elegans]
|
KAI1710187.1 zinc-finger of nitric oxide synthase-interacting protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0061630
|
GO:0005575_0.929|GO:0008150_0.926|GO:0110165_0.917|GO:0005622_0.895|GO:0043226_0.847|GO:0016020_0.835|GO:0043229_0.834|GO:0043227_0.785|GO:0043231_0.769|GO:0005634_0.709|GO:0008152_0.667|GO:0009058_0.662|GO:0065007_0.582|GO:0003674_0.577
|
IPR013083+45-80_249-305+|IPR016818+1-323_1-326+|IPR031790+4-78+
|
— |
PF15906+4-78+Zinc-finger_of_nitric_oxide_synthase-interacting_protein
|
— |
PTHR13063+1-323+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
84-196
|
2.000
|
1-83;197-327
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
37231.470
|
9.276
|
11.500
|
31.804
|
8.869
|
51.988
|
48.012
|
18.043
|
13.761
|
47.401
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
304.198
|
49.734
|
18.123
|
21.407
|
21.245
|
17.402
|
64.136
|
39.624
|
30.319
|
1221.250
|
710.851
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.692
|
-1.353
|
— | — | — |
1.894
|
1.087
|
0.839
|
-5.450
|
— |
-5.253
|
— | — |
No JSON data available for plots.