Hg_chrom3_TN10mRNA_4748
Organism: Heterodera glycines Gene Locus: chr3:1815240-1817885 Feature type: polypeptideProtein Sequence
Length: 322
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.047 | 0.65 | 1.073 | 0.75 | 1.346 | 1.194 | 0.444 | 0.776 | 1.035 | 1.049 | 1.318 | 1.279 | 0.604 | 1.374 | 1.584 | 1.154 | 0.764 | 0.706 | 1.194 | 0.822 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4498
|
— | — |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.736
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.870
|
0.107
|
0.011
|
0.289
|
0.043
|
0.036
|
0.093
|
0.006
|
0.038
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003495
|
2.000
|
1.000
|
Hsc_gene_16801.t1
|
Hsc_gene_16801.t1
|
— |
Q21755.1 Nitric oxide synthase-interacting protein homolog [Caenorhabditis elegans]
|
KAI1710187.1 zinc-finger of nitric oxide synthase-interacting protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0061630
|
GO:0005575_0.930|GO:0008150_0.929|GO:0110165_0.922|GO:0005622_0.894|GO:0043226_0.849|GO:0016020_0.837|GO:0043229_0.831|GO:0043227_0.784|GO:0043231_0.768|GO:0005634_0.708|GO:0008152_0.664|GO:0009058_0.661|GO:0065007_0.592|GO:0003674_0.575
|
IPR013083+45-80_244-300+|IPR016818+1-318_1-321+|IPR031790+4-78+
|
— |
PF15906+4-78+Zinc-finger_of_nitric_oxide_synthase-interacting_protein
|
— |
PTHR13063+1-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
81-191
|
2.000
|
1-80;192-322
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
36533.640
|
9.112
|
10.500
|
31.988
|
8.075
|
52.174
|
47.826
|
18.012
|
13.975
|
48.137
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
490.178
|
46.388
|
39.318
|
39.245
|
42.381
|
33.672
|
96.812
|
63.799
|
465.484
|
1659.809
|
1147.955
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.472
|
— | — | — | — |
1.534
|
0.821
|
0.743
|
— | — |
-3.307
|
— | — |
No JSON data available for plots.