Hg_chrom3_TN10mRNA_4752
Organism: Heterodera glycines Gene Locus: chr3:1841948-1843651 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.744 | 1.758 | 1.374 | 0.501 | 0.678 | 0.298 | 0.519 | 1.308 | 1.809 | 2.475 | 1.233 | 2.052 | 1.13 | 0.894 | 0.475 | 0.457 | 0.477 | 1.277 | 0.0 | 0.342 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4502
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.507
|
0.211
|
0.024
|
0.474
|
0.079
|
0.048
|
0.025
|
0.097
|
0.236
|
0.305
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001178
|
4.000
|
1.000
|
Hsc_gene_16802.t1
|
— | — | — |
AVA09693.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.896|GO:0110165_0.896|GO:0016020_0.826|GO:0005622_0.823|GO:0005737_0.797|GO:0008150_0.786|GO:0043226_0.764|GO:0043229_0.751|GO:0043227_0.727|GO:0043231_0.719|GO:0009987_0.718|GO:0003674_0.709|GO:0003824_0.622|GO:0008152_0.621|GO:0044238_0.608|GO:0071840_0.585|GO:0043170_0.579|GO:0016043_0.576|GO:0005739_0.567|GO:0006139_0.543|GO:0009056_0.543|GO:0016787_0.538|GO:0090304_0.533|GO:0009057_0.527|GO:0006259_0.520|GO:0034655_0.516|GO:0141188_0.516|GO:0016788_0.513|GO:0004518_0.512|GO:0004536_0.512|GO:0006308_0.512|GO:0140097_0.512|GO:0140640_0.512
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-344
|
5gkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
38287.630
|
6.583
|
0.500
|
24.709
|
7.849
|
39.535
|
60.465
|
13.081
|
11.628
|
46.512
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
203.363
|
105.552
|
99.942
|
91.162
|
77.010
|
71.864
|
43.716
|
98.178
|
291.106
|
451.101
|
382.532
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.310
|
-0.348
|
— | — | — |
-0.707
|
— |
-1.024
|
— | — | — | — | — |
No JSON data available for plots.