Hg_chrom3_TN10mRNA_4753
Organism: Heterodera glycines Gene Locus: chr3:1843703-1845040 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.607 | 1.921 | 1.265 | 0.75 | 0.725 | 0.446 | 0.569 | 1.522 | 1.836 | 2.233 | 1.186 | 2.558 | 1.208 | 0.92 | 0.532 | 0.435 | 0.285 | 1.318 | 0.0 | 0.384 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4503
|
— | — |
0.778
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.584
|
0.250
|
0.021
|
0.468
|
0.195
|
0.046
|
0.071
|
0.087
|
0.186
|
0.325
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001178
|
4.000
|
1.000
|
Hsc_gene_16802.t1
|
— | — |
Q14249.4 Endonuclease G, mitochondrial [Homo sapiens]
|
AVA09693.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.890|GO:0110165_0.890|GO:0016020_0.826|GO:0005622_0.821|GO:0005737_0.787|GO:0008150_0.784|GO:0043226_0.771|GO:0043229_0.758|GO:0043227_0.734|GO:0043231_0.734|GO:0009987_0.716|GO:0003674_0.714|GO:0008152_0.632|GO:0003824_0.615|GO:0044238_0.612|GO:0043170_0.583|GO:0071840_0.576|GO:0005739_0.570|GO:0016043_0.570|GO:0006139_0.547|GO:0009056_0.540|GO:0016787_0.536|GO:0090304_0.533|GO:0009057_0.526|GO:0006259_0.518|GO:0034655_0.515|GO:0141188_0.514|GO:0004518_0.511|GO:0004536_0.511|GO:0006308_0.511|GO:0016788_0.511|GO:0140097_0.511|GO:0140640_0.511
|
IPR044925+66-132+|IPR044929+47-140+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-230
|
5gkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
25819.750
|
6.826
|
1.500
|
24.783
|
8.696
|
39.565
|
60.435
|
13.478
|
11.304
|
45.652
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightyellow
|
275.691
|
82.499
|
71.448
|
82.858
|
64.129
|
58.863
|
44.412
|
87.381
|
1.382
|
1020.766
|
583.888
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.437
|
— |
0.322
|
-0.400
|
— | — |
0.462
|
-0.832
|
-9.790
|
6.238
|
-3.919
|
— | — |
No JSON data available for plots.