Hg_chrom3_TN10mRNA_4762
Organism: Heterodera glycines Gene Locus: chr3:1896022-1898545 Feature type: polypeptideProtein Sequence
Length: 191
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.852 | 1.461 | 0.952 | 2.347 | 1.134 | 1.477 | 0.748 | 1.571 | 1.396 | 0.778 | 0.476 | 3.08 | 1.745 | 1.108 | 0.321 | 0.524 | 1.373 | 0.635 | 0.805 | 0.308 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4512
|
— | — |
0.222
|
— |
1.000
|
1.000
|
— | — | — | — | — | — |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-20
|
0.974
|
1.000
|
1.000
|
1.000
|
0.079
|
0.044
|
0.009
|
0.100
|
0.071
|
0.070
|
0.082
|
0.079
|
0.893
|
0.512
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003498
|
2.000
|
1.000
|
Hsc_gene_16811.t1
|
— | — | — | — |
MBK8627919
|
0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-191
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
21175.130
|
4.300
|
-11.000
|
19.895
|
11.518
|
43.979
|
56.021
|
7.853
|
12.042
|
53.927
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
19.368
|
0.000
|
4.570
|
0.447
|
1.532
|
63.254
|
1.635
|
89.753
|
0.000
|
24.287
|
13.878
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.528
|
— |
-3.264
|
— |
5.355
|
-5.249
|
— |
-5.627
|
— | — | — | — | — |