SCN Proteipedia

Hg_chrom3_TN10mRNA_4763

Organism: Heterodera glycines Gene Locus: chr3:1904120-1928740 Feature type: polypeptide

Protein Sequence

Length: 2,093

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.856	1.544	1.051	0.527	0.948	1.642	0.58	1.696	0.966	1.175	0.702	1.63	1.155	0.827	1.424	1.174	0.854	0.796	0.735	0.829	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4513	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.518

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRRK,RRKKKLR,RKIMLLMMMMKKRNY,KRMLDIENERAKKKQQK,KKRNYNNNIDKKGRRKAP	29-74	0.990	—	—	—	—	0.002	—	—	0.084	0.084	0.019	0.259	0.287	0.445	0.344	0.033	0.751	0.128

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003499	1.000	2.000	Hsc_gene_16816.t1;Hsc_gene_16816.t2	Hsc_gene_16813.t1;Hsc_gene_16816.t1;Hsc_gene_16816.t2	—	Q19187.3 Receptor-type guanylate cyclase gcy-12 [Caenorhabditis elegans]	KHN75895.1 Guanylate cyclase 32E [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468\|GO:0009190\|GO:0016849\|GO:0035556	GO:0008150_0.976\|GO:0005575_0.864\|GO:0009987_0.852\|GO:0110165_0.842\|GO:0003674_0.775\|GO:0065007_0.715\|GO:0016020_0.686\|GO:0050789_0.682\|GO:0071944_0.674\|GO:0005886_0.665\|GO:0006139_0.659\|GO:0008152_0.659\|GO:0009058_0.659\|GO:0034654_0.659\|GO:0044238_0.659\|GO:0050896_0.643\|GO:0050794_0.621\|GO:0032501_0.591\|GO:0044237_0.586\|GO:0003824_0.563\|GO:0043226_0.547\|GO:0005622_0.540\|GO:0006793_0.516\|GO:0006796_0.516	IPR000719+727-1062+\|IPR001054+1102-1298_1130-1316_1137-1315_1138-1269+\|IPR001245+779-1055+\|IPR001828+173-306_390-611+\|IPR011009+777-1065+\|IPR018297+1246-1269+\|IPR028082+159-311_394-668+\|IPR029787+1099-1322_1127-1325+\|IPR050401+241-1321+	SM00044+1102-1298+	PF00211+1130-1316+Adenylate_and_Guanylate_cyclase_catalytic_domain\|PF01094+173-306_390-611+Receptor_family_ligand_binding_region\|PF07714+779-1055+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:3.30.70.1230:FF:000004+1094-1321+Guanylate_cyclase	PTHR11920+241-1321+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	307-390;1320-1396;1472-2093	3.000	1-306;391-1319;1397-1471	9p2r_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.760	237678.270	7.802	38.500	26.469	11.323	52.938	47.062	15.002	11.467	49.164

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	1007.138	432.161	819.562	642.077	210.326	328.592	512.580	335.882	1450.008	2088.280	1814.735

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.694	0.434	-0.244	-1.643	0.658	0.651	—	0.752	—	—	-2.949	—	—

No JSON data available for plots.

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