Hg_chrom3_TN10mRNA_4764
Organism: Heterodera glycines Gene Locus: chr3:1932557-1934262 Feature type: polypeptideProtein Sequence
Length: 196
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.949 | 1.661 | 0.928 | 1.583 | 0.68 | 0.785 | 0.911 | 1.02 | 1.02 | 1.172 | 0.618 | 0.6 | 1.417 | 0.687 | 1.041 | 1.239 | 0.836 | 1.237 | 1.177 | 0.75 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4514
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.698
|
0.135
|
0.008
|
0.432
|
0.088
|
0.141
|
0.059
|
0.013
|
0.061
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_16817.t1
|
— |
Q09309.3 Retinoblastoma-binding protein homolog 5 [Caenorhabditis elegans]
|
KAI1706923.1 retinoblastoma-binding protein like protein 5 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0048188
|
GO:0005575_0.844|GO:0110165_0.830|GO:0008150_0.777|GO:0005622_0.739|GO:0016020_0.702|GO:0043226_0.681|GO:0043229_0.668|GO:0043227_0.637|GO:0043231_0.633|GO:0009987_0.619|GO:0005634_0.534
|
IPR001680+16-55_30-55_58-97_62-96_65-98+|IPR015943+15-191+|IPR036322+21-186+|IPR037850+3-186+
|
SM00320+16-55_58-97+
|
PF00400+30-55_62-96+WD_domain,_G-beta_repeat
|
— |
PTHR44040+3-186+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-196
|
7plo_J
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
21433.320
|
7.166
|
2.000
|
20.408
|
11.224
|
44.388
|
55.612
|
11.224
|
9.184
|
58.163
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
174.385
|
346.115
|
223.474
|
240.649
|
217.672
|
233.341
|
270.130
|
189.999
|
149.668
|
5.167
|
67.096
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.861
|
-0.662
|
0.216
|
-0.178
|
— | — | — |
0.648
|
5.245
|
— |
6.116
|
— | — |
No JSON data available for plots.