Hg_chrom3_TN10mRNA_4765
Organism: Heterodera glycines Gene Locus: chr3:1942936-1946616 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.639 | 0.879 | 1.25 | 1.066 | 1.432 | 1.322 | 0.9 | 1.718 | 0.916 | 0.929 | 0.677 | 0.404 | 0.859 | 0.727 | 1.262 | 1.473 | 0.62 | 1.354 | 1.586 | 0.505 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4515
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
GGGGGSSQKSHRNRRSK
|
47-78
|
0.856
|
— | — | — | — |
0.000
|
— | — |
0.938
|
0.092
|
0.009
|
0.367
|
0.176
|
0.029
|
0.055
|
0.003
|
0.037
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007431
|
1.000
|
1.000
|
Hsc_gene_16817.t1
|
Hsc_gene_16817.t1
|
— |
Q09309.3 Retinoblastoma-binding protein homolog 5 [Caenorhabditis elegans]
|
KAI1706923.1 retinoblastoma-binding protein like protein 5 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0048188
|
GO:0005575_0.871|GO:0110165_0.868|GO:0008150_0.811|GO:0005622_0.797|GO:0016020_0.753|GO:0043226_0.732|GO:0043229_0.714|GO:0043227_0.695|GO:0043231_0.675|GO:0009987_0.628|GO:0005634_0.617|GO:0071840_0.510|GO:0016043_0.509|GO:0031974_0.502|GO:0043233_0.502
|
IPR001680+13-53_70-112_115-155+|IPR015943+2-154+|IPR036322+3-154+|IPR037850+3-268+
|
SM00320+13-53_70-112_115-155+
|
— | — |
PTHR44040+3-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
175-291
|
1.000
|
1-174
|
5ov3_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
32405.950
|
4.999
|
-9.000
|
29.553
|
10.309
|
52.577
|
47.423
|
14.089
|
15.464
|
53.608
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
528.384
|
843.714
|
513.876
|
548.656
|
546.447
|
478.641
|
504.692
|
396.082
|
297.185
|
651.752
|
499.795
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.945
|
-0.758
|
0.203
|
— | — | — |
-0.378
|
0.493
|
— | — | — | — | — |
No JSON data available for plots.