Hg_chrom3_TN10mRNA_4770
Organism: Heterodera glycines Gene Locus: chr3:1965687-1970136 Feature type: polypeptideProtein Sequence
Length: 402
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.099 | 1.041 | 0.543 | 0.686 | 0.415 | 0.574 | 0.711 | 0.622 | 1.382 | 2.084 | 0.49 | 1.61 | 1.935 | 0.67 | 0.66 | 1.315 | 0.938 | 1.47 | 1.722 | 0.293 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4519
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.440
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
29-49
|
0.952
|
— | — | — | — |
0.000
|
— | — |
0.069
|
0.064
|
0.041
|
0.109
|
0.338
|
0.519
|
0.684
|
0.049
|
0.348
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001918
|
3.000
|
1.000
|
Hsc_gene_15696.t1
|
Hsc_gene_8890.t1
|
— |
Q1LZI2.1 Solute carrier family 35 member F3 [Mus musculus]
|
KAI1724262.1 eamA-like transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.757|GO:0051179_0.677|GO:0051234_0.677|GO:0006810_0.676|GO:0071705_0.554|GO:0005575_0.539|GO:0110165_0.539|GO:0016020_0.516
|
IPR026505+28-356+
|
— | — | — |
PTHR19346+28-356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-402
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
43685.700
|
8.303
|
6.500
|
13.184
|
11.443
|
34.826
|
65.174
|
7.711
|
5.473
|
52.985
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
570.006
|
284.399
|
512.546
|
517.755
|
285.749
|
551.415
|
407.420
|
409.635
|
990.509
|
637.552
|
788.819
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.622
|
0.727
|
— |
-0.890
|
0.963
|
-0.428
|
-0.533
|
— | — | — | — | — | — |
No JSON data available for plots.