Hg_chrom3_TN10mRNA_4771
Organism: Heterodera glycines Gene Locus: chr3:1973480-1977649 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.989 | 0.546 | 0.746 | 1.011 | 0.88 | 1.203 | 2.06 | 0.587 | 0.782 | 0.555 | 0.355 | 0.69 | 0.815 | 3.384 | 1.436 | 0.712 | 0.865 | 0.533 | 0.0 | 0.345 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4520
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.036
|
0.041
|
0.012
|
0.130
|
0.518
|
0.301
|
0.340
|
0.003
|
0.755
|
0.236
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007432
|
1.000
|
1.000
|
Hsc_gene_16823.t1
|
Hsc_gene_16823.t1;Hsc_gene_18967.t1;Hsc_gene_18980.t1;Hsc_gene_19933.t1;Hsc_gene_25812.t1
|
D2024.8;F23H12.4b;Y49F6B.10
|
P08124.2 Cuticle collagen 1 [Caenorhabditis elegans]
|
KAI1725154.1 collagen triple helix repeat (20 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.940|GO:0032501_0.872|GO:0032502_0.855|GO:0048856_0.855|GO:0007275_0.827|GO:0005575_0.700|GO:0110165_0.697|GO:0040002_0.670|GO:0042335_0.670|GO:0071944_0.588|GO:0042303_0.533|GO:0018996_0.525|GO:0042338_0.525
|
IPR002486+38-90_41-89+|IPR008160+193-249_258-316+|IPR050632+44-325+
|
SM01088+38-90+
|
PF01391+193-249_258-316+Collagen_triple_helix_repeat_(20_copies)|PF01484+41-89+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+44-325+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23;131-341
|
1.000
|
24-130
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
34605.650
|
7.154
|
2.000
|
19.941
|
5.279
|
37.243
|
62.757
|
10.557
|
9.384
|
66.569
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
3453.469
|
595.788
|
58.144
|
41.288
|
9769.641
|
26912.123
|
136.260
|
1152.116
|
19.989
|
594.426
|
348.238
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.583
|
-3.988
|
-0.386
|
7.854
|
1.478
|
-7.618
|
-4.659
|
-2.936
|
-5.033
|
— |
4.250
|
— | — |
No JSON data available for plots.