Hg_chrom3_TN10mRNA_4776
Organism: Heterodera glycines Gene Locus: chr3:2015883-2016304 Feature type: polypeptideProtein Sequence
Length: 75
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 1.86 | 0.727 | 0.0 | 0.0 | 0.684 | 0.635 | 0.0 | 1.185 | 0.721 | 1.01 | 2.353 | 2.222 | 1.282 | 2.721 | 1.143 | 0.656 | 1.01 | 0.0 | 1.176 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4525
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_16833
|
— |
9-Migratory
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RRNVKYIDYGPLIRQARK,RKNQNRNKNSRPIKTRPSPRRG
|
— | — | — | — |
1-29
|
0.643
|
0.953
|
0.000
|
0.000
|
0.791
|
0.206
|
0.011
|
0.383
|
0.096
|
0.053
|
0.046
|
0.013
|
0.110
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000803
|
1.000
|
5.000
|
Hsc_gene_16831.t1;Hsc_gene_16833.t1;Hsc_gene_17459.t1;Hsc_gene_17467.t1;Hsc_gene_21723.t1
|
— | — | — | — |
WP_093407144
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
43-75
|
1.000
|
1-42
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
8640.060
|
12.178
|
12.000
|
24.000
|
12.000
|
46.667
|
53.333
|
20.000
|
4.000
|
50.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
4312.170
|
67.485
|
2968.972
|
1743.865
|
291.869
|
40.225
|
37.934
|
1645.006
|
21277.700
|
359.209
|
9324.277
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.231
|
4.553
|
-0.660
|
-2.611
|
-2.844
|
— |
5.263
|
-5.300
|
5.788
|
-3.475
|
— | — | — |