Hg_chrom3_TN10mRNA_4781
Organism: Heterodera glycines Gene Locus: chr3:2050969-2053383 Feature type: polypeptideProtein Sequence
Length: 248
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.61 | 1.5 | 0.733 | 0.695 | 1.613 | 1.964 | 0.768 | 0.605 | 1.882 | 1.526 | 1.65 | 1.898 | 0.896 | 0.465 | 0.905 | 0.576 | 0.661 | 0.428 | 0.31 | 0.593 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4530
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — |
0.790
|
0.119
|
0.000
|
— |
0.479
|
0.102
|
0.007
|
0.546
|
0.239
|
0.153
|
0.072
|
0.005
|
0.203
|
0.265
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000296
|
1.000
|
8.000
|
Hsc_gene_11855.t1;Hsc_gene_11855.t2;Hsc_gene_11858.t1;Hsc_gene_17435.t1;Hsc_gene_17435.t2;Hsc_gene_17440.t1;Hsc_gene_20834.t1;Hsc_gene_20837.t1
|
— | — |
P0CG83.1 Polyubiquitin [Hordeum vulgare]
|
XP_037457539.1 polyubiquitin-like [Triticum dicoccoides]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.903|GO:0110165_0.903|GO:0005622_0.815|GO:0016020_0.759|GO:0043226_0.738|GO:0043229_0.721|GO:0005737_0.685|GO:0043227_0.653|GO:0003674_0.651|GO:0043231_0.613|GO:0008150_0.564|GO:0071944_0.505
|
IPR000626+173-244_173-248_175-245+|IPR019956+183-203_204-224_225-246+|IPR029071+167-247+|IPR050158+173-247+
|
SM00213+173-244+
|
PF00240+175-245+Ubiquitin_family
|
— |
PTHR10666+173-247+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
138-182
|
2.000
|
1-137;183-248
|
8du4_O
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
28402.870
|
8.597
|
5.500
|
30.242
|
6.855
|
52.419
|
47.581
|
16.532
|
13.710
|
37.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
1288.557
|
34.177
|
127.109
|
795.910
|
138.062
|
39.124
|
76.613
|
47.854
|
4685.699
|
1651.097
|
2951.640
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.667
|
4.406
|
2.755
|
-2.558
|
-1.805
|
0.981
|
— |
0.820
|
— |
-2.404
|
-3.445
|
— | — |