SCN Proteipedia

Hg_chrom3_TN10mRNA_4783

Organism: Heterodera glycines Gene Locus: chr3:2055963-2061973 Feature type: polypeptide

Protein Sequence

Length: 429

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.922	0.867	0.932	0.402	1.671	2.092	0.666	0.699	1.502	1.008	1.766	1.234	0.777	0.717	0.999	1.132	0.688	0.494	0.0	0.617	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4531	—	—	1.222	2.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.954

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.805	0.092	0.015	0.479	0.062	0.045	0.033	0.007	0.095	0.122

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003501	2.000	1.000	Hsc_gene_16502.t1	—	—	P62975.1 Ubiquitin [Oryctolagus cuniculus]	6NJ9_L Chain L, Ubiquitin [Homo sapiens];6NJ9_N Chain N, Ubiquitin [Homo sapiens];6NOG_L Chain L, Ubiquitin [Homo sapiens];6NQA_L Chain L, Ubiquitin [Homo sapiens];6VEN_K Chain K, Ubiquitin [Homo sapiens];8G6G_K Chain K, Ubiquitin [Homo sapiens];8G6H_K Chain K, Ubiquitin [Homo sapiens];8G6Q_K Chain K, Ubiquitin [Homo sapiens];8G6S_K Chain K, Ubiquitin [Homo sapiens]	No	-0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.938\|GO:0110165_0.938\|GO:0005622_0.911\|GO:0043226_0.851\|GO:0043229_0.840\|GO:0016020_0.796\|GO:0043227_0.737\|GO:0005737_0.728\|GO:0043231_0.697\|GO:0043228_0.553\|GO:0043232_0.548\|GO:0008150_0.547\|GO:0003674_0.527\|GO:0005634_0.521\|GO:0005829_0.519	IPR000626+353-425_353-429_355-426+\|IPR019956+364-384_385-405_406-427+\|IPR029071+342-428+\|IPR050158+353-428+	SM00213+353-425+	PF00240+355-426+Ubiquitin_family	G3DSA:3.10.20.90:FF:000211+351-428+Polyubiquitin_9	PTHR10666+353-428+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-121;230-360	2.000	122-229;361-429	8du4_O	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.741	48265.710	8.963	9.000	33.100	6.294	57.110	42.890	17.949	15.152	42.657

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	321.534	666.895	352.667	263.023	285.667	229.039	348.535	170.399	24.843	519.492	307.500

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.149	-1.479	-0.315	—	—	0.617	-0.537	1.177	-4.472	3.577	—	—	—

No JSON data available for plots.

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