Hg_chrom3_TN10mRNA_4784
Organism: Heterodera glycines Gene Locus: chr3:2064592-2069952 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 1.837 | 0.862 | 0.701 | 0.865 | 1.158 | 1.048 | 1.242 | 1.304 | 1.037 | 1.026 | 0.797 | 1.003 | 0.651 | 0.461 | 1.58 | 0.962 | 0.889 | 0.347 | 0.664 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4532
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.668
|
0.086
|
0.015
|
0.456
|
0.128
|
0.118
|
0.097
|
0.034
|
0.082
|
0.268
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000397
|
4.000
|
4.000
|
Hsc_gene_11857.t1;Hsc_gene_11857.t2;Hsc_gene_20833.t1;Hsc_gene_346.t1
|
Hsc_gene_11857.t1;Hsc_gene_11857.t2;Hsc_gene_20833.t1
|
— | — |
KAI3419178.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.748|GO:0110165_0.744|GO:0008150_0.717|GO:0005622_0.685|GO:0005737_0.614|GO:0009987_0.545
|
IPR001870+200-437+|IPR003877+275-436_278-433+|IPR013320+192-438+|IPR043136+180-441+|IPR044736+264-433+|IPR050618+101-433+
|
SM00449+275-436+
|
PF00622+278-433+SPRY_domain
|
— |
PTHR12864+101-433+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-103
|
1.000
|
104-443
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
47382.950
|
6.709
|
1.500
|
21.445
|
8.804
|
50.790
|
49.210
|
11.512
|
9.932
|
57.562
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
238.760
|
16.665
|
55.657
|
35.723
|
35.969
|
40.321
|
71.978
|
14.858
|
21.001
|
927.133
|
538.791
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.506
|
0.964
|
-0.528
|
— | — |
0.843
|
-1.546
|
2.415
|
-5.602
|
— | — | — | — |
No JSON data available for plots.