SCN Proteipedia

Hg_chrom3_TN10mRNA_4789

Organism: Heterodera glycines Gene Locus: chr3:2098931-2120619 Feature type: polypeptide

Protein Sequence

Length: 2,099

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.269	0.787	0.987	0.641	1.159	2.028	0.669	1.62	0.741	1.082	0.65	1.485	0.887	1.081	1.342	1.089	0.883	0.816	0.586	0.589	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4537	—	—	1.111	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.880

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRRR,RRRKFS,RKFSMRNARDEPKSRTDRR	—	—	—	—	—	—	0.000	—	—	0.269	0.122	0.009	0.629	0.159	0.271	0.198	0.003	0.494	0.036

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003502	1.000	2.000	Hsc_gene_20850.t1;Hsc_gene_20850.t2	Hsc_gene_17834.t1;Hsc_gene_19780.t1;Hsc_gene_19780.t2;Hsc_gene_20850.t1;Hsc_gene_20850.t2	—	O01583.3 Serine/threonine-protein kinase mrck-1 [Caenorhabditis elegans]	KAI1705501.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.961\|GO:0009987_0.916\|GO:0005575_0.908\|GO:0110165_0.906\|GO:0005622_0.831\|GO:0016043_0.768\|GO:0071840_0.768\|GO:0065007_0.763\|GO:0003674_0.758\|GO:0050789_0.750\|GO:0050794_0.687\|GO:0006996_0.639\|GO:0003824_0.629\|GO:0140096_0.629\|GO:0016740_0.618\|GO:0016772_0.581\|GO:0005737_0.567\|GO:0043226_0.565\|GO:0016301_0.562\|GO:0032501_0.560\|GO:0016020_0.548\|GO:0016773_0.547\|GO:0004672_0.544\|GO:0043229_0.525\|GO:0032502_0.524\|GO:0048856_0.524\|GO:0005488_0.506	IPR000095+1877-1890+\|IPR000719+50-304_50-317+\|IPR000961+318-382_318-390+\|IPR001180+1486-1797_1487-1814_1506-1792+\|IPR001849+1253-1459+\|IPR002219+1184-1234_1185-1234_1185-1235+\|IPR008271+172-184+\|IPR011009+27-367+\|IPR011993+1255-1384+\|IPR017441+56-78+\|IPR046349+1183-1237+\|IPR050839+2-1829+	SM00036+1487-1814+\|SM00109+1185-1234+\|SM00133+318-382+\|SM00220+50-317+	PF00069+50-304+Protein_kinase_domain\|PF00130+1185-1235+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)\|PF00780+1506-1792+CNH_domain	G3DSA:1.10.510.10:FF:000014+133-337+Non-specific_serine/threonine_protein_kinase\|G3DSA:3.30.200.20:FF:001055+1-146+Serine/threonine-protein_kinase_MRCK_beta	PTHR22988+2-1829+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	394-1144;1356-1422;1815-2099	3.000	1-393;1145-1355;1423-1814	4aw2_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.594	232404.690	6.556	2.000	26.489	9.195	50.786	49.214	14.102	12.387	51.215

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	greenyellow	2665.498	2828.995	2289.469	1892.080	1679.861	1785.179	2154.393	1123.346	2069.175	4952.176	3716.604

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.534	-0.717	-0.167	-0.203	—	0.281	-0.775	1.082	—	—	—	—	—

No JSON data available for plots.

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