SCN Proteipedia

Hg_chrom3_TN10mRNA_4792

Organism: Heterodera glycines Gene Locus: chr3:2138710-2156539 Feature type: polypeptide

Protein Sequence

Length: 1,728

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.935	0.982	0.81	0.479	1.399	2.063	0.675	1.36	1.145	1.181	0.658	1.021	0.82	1.002	1.299	1.0	1.025	0.982	0.979	0.46	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4540	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KRLTKLSSQWEKEYKNRKN	—	—	24-57	0.926	—	—	0.000	—	—	0.390	0.109	0.017	0.726	0.059	0.070	0.084	0.008	0.604	0.162

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003503	2.000	1.000	Hsc_gene_338.t1	Hsc_gene_338.t1;Hsc_gene_339.t1	—	Q63155.2 Netrin receptor DCC [Rattus norvegicus]	KAI1712385.1 immunoglobulin i-set domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.881\|GO:0110165_0.876\|GO:0008150_0.837\|GO:0009987_0.775\|GO:0005622_0.747\|GO:0043226_0.661\|GO:0003674_0.656\|GO:0043229_0.622\|GO:0032502_0.613\|GO:0048856_0.613\|GO:0005737_0.592\|GO:0016020_0.582\|GO:0005488_0.578\|GO:0065007_0.560\|GO:0050789_0.549\|GO:0016043_0.544\|GO:0071840_0.544\|GO:0005515_0.527	IPR003598+703-771_868-935_1022-1096_1237-1305_1504-1571_1600-1669+\|IPR003599+697-782_862-946_1016-1107_1231-1316_1498-1582_1594-1680+\|IPR007110+690-780_856-939_1010-1105_1224-1314_1492-1580_1588-1678+\|IPR013098+700-781_856-938_1010-1106_1225-1314_1492-1579_1588-1679+\|IPR013783+684-785_851-959_1004-1108_1218-1325_1486-1583_1584-1685+\|IPR036179+688-781_856-949_1008-1107_1223-1322_1491-1580_1586-1684+\|IPR051129+1481-1582+	SM00408+703-771_868-935_1022-1096_1237-1305_1504-1571_1600-1669+\|SM00409+697-782_862-946_1016-1107_1231-1316_1498-1582_1594-1680+	PF07679+700-781_856-938_1010-1106_1225-1314_1492-1579_1588-1679+Immunoglobulin_I-set_domain	G3DSA:2.60.40.10:FF:000017+1008-1107+Down_syndrome_cell_adhesion_molecule_b\|G3DSA:2.60.40.10:FF:000425+851-948_1487-1584_1585-1683+Myosin_light_chain_kinase	PTHR47633+1481-1582+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-34;786-861;1096-1204;1350-1502;1705-1728	4.000	35-785;862-1095;1205-1349;1503-1704	2yr3_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.542	193328.660	6.039	-13.500	26.273	8.507	51.794	48.206	13.426	12.847	48.727

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1082.821	1086.761	1210.849	521.493	513.068	866.030	306.174	1366.347	2600.907	585.140	1449.040

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.196	-1.107	—	0.770	-1.491	0.554	-2.017	2.052	-2.169	—	—	—

No JSON data available for plots.

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