Hg_chrom3_TN10mRNA_4801
Organism: Heterodera glycines Gene Locus: chr3:2198127-2203964 Feature type: polypeptideProtein Sequence
Length: 405
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.804 | 1.665 | 0.763 | 0.937 | 0.741 | 1.456 | 1.235 | 1.481 | 1.372 | 0.968 | 1.16 | 1.162 | 1.029 | 0.427 | 0.454 | 1.411 | 0.931 | 0.748 | 0.57 | 0.944 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4547
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.478
|
0.075
|
0.015
|
0.528
|
0.257
|
0.209
|
0.129
|
0.067
|
0.145
|
0.304
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000397
|
4.000
|
4.000
|
Hsc_gene_11857.t1;Hsc_gene_11857.t2;Hsc_gene_20833.t1;Hsc_gene_346.t1
|
— | — | — |
KAI3419178.1 Ran-binding protein 9 [Globodera pallida]
|
KAB4689344
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.726|GO:0008150_0.720|GO:0110165_0.719|GO:0005622_0.669|GO:0005737_0.587|GO:0009987_0.549
|
IPR001870+141-397+|IPR003877+235-396_238-393+|IPR013320+153-398+|IPR043136+144-404+|IPR044736+224-393+|IPR050618+140-393+
|
SM00449+235-396+
|
PF00622+238-393+SPRY_domain
|
— |
PTHR12864+140-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-43
|
1.000
|
44-405
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.925
|
43813.280
|
8.269
|
11.000
|
21.481
|
10.617
|
49.877
|
50.123
|
12.840
|
8.642
|
54.074
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
66.558
|
7.040
|
12.240
|
16.168
|
14.570
|
19.051
|
100.983
|
6.902
|
10.296
|
217.113
|
128.477
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.063
|
— | — | — |
2.412
|
-1.576
|
4.010
|
-4.522
|
— |
-3.707
|
— | — |
No JSON data available for plots.