Hg_chrom3_TN10mRNA_4805
Organism: Heterodera glycines Gene Locus: chr3:2239336-2243608 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.742 | 0.888 | 0.674 | 0.434 | 0.501 | 1.241 | 1.303 | 1.52 | 1.321 | 0.938 | 0.575 | 1.357 | 0.752 | 0.465 | 1.489 | 0.748 | 1.036 | 0.501 | 1.15 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4551
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.126
|
— | — |
0.472
|
0.283
|
0.027
|
0.567
|
0.324
|
0.381
|
0.165
|
0.117
|
0.154
|
0.423
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000397
|
4.000
|
4.000
|
Hsc_gene_11857.t1;Hsc_gene_11857.t2;Hsc_gene_20833.t1;Hsc_gene_346.t1
|
Hsc_gene_11857.t1
|
— | — |
KAI3419178.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.703|GO:0005575_0.700|GO:0110165_0.688|GO:0005622_0.605|GO:0005737_0.593|GO:0009987_0.509
|
IPR001870+64-301+|IPR003877+139-300_142-297+|IPR013320+58-302+|IPR043136+42-305+|IPR044736+128-297+|IPR050618+58-297+
|
SM00449+139-300+
|
PF00622+142-297+SPRY_domain
|
— |
PTHR12864+58-297+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-307
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.951
|
32885.390
|
8.229
|
7.000
|
18.567
|
12.052
|
42.997
|
57.003
|
11.075
|
7.492
|
57.329
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
red
|
93.606
|
32.830
|
102.327
|
75.696
|
59.696
|
67.587
|
145.852
|
28.490
|
9.321
|
210.356
|
124.198
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.408
|
1.068
|
-0.326
|
-0.375
|
— |
1.118
|
-1.357
|
2.498
|
-4.631
|
— | — | — | — |
No JSON data available for plots.