Hg_chrom3_TN10mRNA_4818
Organism: Heterodera glycines Gene Locus: chr3:2303251-2306574 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.024 | 1.474 | 0.448 | 1.214 | 0.176 | 1.354 | 0.21 | 0.88 | 2.191 | 1.475 | 0.427 | 2.486 | 2.054 | 0.813 | 1.15 | 0.503 | 1.039 | 1.174 | 1.083 | 1.45 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4563
|
— | — |
1.889
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
10-43
|
0.980
|
— | — | — | — |
0.000
|
— | — |
0.184
|
0.214
|
0.012
|
0.107
|
0.175
|
0.105
|
0.121
|
0.014
|
0.709
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001903
|
3.000
|
1.000
|
Hsc_gene_16662.t1
|
— | — | — |
KAI3414088.1 hypothetical protein GPALN_011555 [Globodera pallida]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
32898.260
|
9.587
|
16.500
|
13.732
|
15.493
|
35.211
|
64.789
|
10.211
|
3.521
|
44.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
blue
|
52.095
|
1.232
|
3.001
|
4.758
|
1.033
|
3.143
|
0.810
|
29.339
|
12.439
|
202.343
|
120.955
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.816
|
— |
-2.212
|
— | — |
3.126
|
-5.040
|
— | — |
-7.204
|
— | — |
No JSON data available for plots.